Why is flying at hypersonic speed so difficult?

Flying at hypersonic speed is difficult due to generation of shock waves and excessive heat. You can read about the Hypersonic Technology Demonstrator Vehicle (HSTDV) – unmanned scramjet technology of DRDO in the given link.

Further readings:

1. Advanced Technology Vehicle – India, one of the 4 Countries To Develop Scramjet Engine
2. Reusable Launch Vehicle – Technology Demonstrator (RLV – TD)