Obviously, its the brain.
Exercise helps keep you fit and healthy by strengthening your muscles and making your heart beat faster. Your muscles, lungs, and heart all work together to move your body and make sure you are getting enough oxygen. This results in an increase in your breathing rate, or rate of ventilation.
In order to reap the benefits of exercise, your heart and breathing rates must increase. Your muscles are pushing your blood back to your heart at a faster rate, so your heart must increase its rate of pumping to match. Some of the blood pumped by the heart travels to the lungs to get rid of carbon dioxide and pick up oxygen. The increase in heart rate stimulates your breathing rate. With an increase in heart rate, your blood pumps through your muscles at a faster rate, leaving less time for oxygen uptake. Having more oxygen available in the blood, from a faster breathing rate, helps the muscles get the amount they need.